PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G187000.1
Common NameB456_012G187000, LOC105780775
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 347aa    MW: 38720.9 Da    PI: 9.5179
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G187000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.28e-332579155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprl+Wtp+LH+rFveav+qLGG++kAtPk+++++m++ gLtl+h+kSHLQkYRl
  Gorai.012G187000.1 25 KPRLKWTPQLHQRFVEAVNQLGGADKATPKSLMRIMGISGLTLYHLKSHLQKYRL 79
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.8492282IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-312379IPR009057Homeodomain-like
SuperFamilySSF466892.33E-162479IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-232580IPR006447Myb domain, plants
PfamPF002492.1E-82778IPR001005SANT/Myb domain
PfamPF143794.0E-20119165IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSLLHNNIKN MGHQNMNLVL STDTKPRLKW TPQLHQRFVE AVNQLGGADK ATPKSLMRIM  60
GISGLTLYHL KSHLQKYRLG KFQQTEICHS NKLDDYKEIR SNNGNFSDGT HNQMNESLQI  120
AQALQMQMEV QRKLHEQIMV QRHLQLRIEA QGKYLQLVLK KAQETLVGYS SSSVGVGLAK  180
AELSRLGSMV NTGCTSSLFS ELTKIGDSNL KEIERSPIRG TMSSMESSLT ASESCRRKDV  240
EPPQDENICT QKSSTSAELS LMDVHTEKKP LISGSSNQAN GKKRSGSDFS DGILVEQPLA  300
KRLEFPGEET GYRLRKSGLL RSFDLNSQRH NDTESASKAV DLNCRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6142762e-56JX614276.1 Gossypium hirsutum clone NBRI_GE57551 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012460723.10.0PREDICTED: uncharacterized protein LOC105780775
TrEMBLA0A0D2W0T10.0A0A0D2W0T1_G
STRINGVIT_01s0026g02550.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.12e-73G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]